MASH Modular Analysis & Simulation for Human Health
MASH-package	MASH (Modular Analysis and Simulation for Human Health)
MICRO Microsimulation TILE classes, methods, fields, and functions
add_MicroEggQ	MICRO AquaticSite Method: Add a batch to the EggQ
add_MicroImagoQ	MICRO AquaticSite Method: Add emerging adults to the ImagoQ
add_riskList	MICRO FeedingSite Method: Add a Person's Risk to a Risk List
addCohort_MicroEmerge	MICRO Landscape Method: Get Emerging Adults from ImagoQ and Zero out ImagoQ
AquaticSite	MICRO-Site Aquatic Habitat Class Definition
clear_MicroEggQ	MICRO AquaticSite Method: Clear the EggQ
clear_MicroImagoQ	MICRO AquaticSite Method: Clear the ImagoQ
emergingAdults_MicroEmerge	MICRO Landscape Method: Get Emerging Adults from ImagoQ and Zero out ImagoQ
empty_MicroEggQ	MICRO AquaticSite Method: Get indices of empty EggQ slots
empty_MicroImagoQ	MICRO AquaticSite Method: Get indices of empty ImagoQ slots
extend_MicroEggQ	MICRO AquaticSite Method: Extend the EggQ
extend_MicroImagoQ	MICRO AquaticSite Method: Extend the ImagoQ
extend_riskList	MICRO FeedingSite Method: Extend a Risk List
FeedingSite	MICRO Feeding Site Class Definition
full_MicroEggQ	MICRO AquaticSite Method: Get indices of full EggQ slots
full_MicroImagoQ	MICRO AquaticSite Method: Get indices of full ImagoQ slots
get_MicroEggQ	MICRO AquaticSite Method: Get the EggQ
get_MicroImagoQ	MICRO AquaticSite Method: Get the ImagoQ
get_MicroLambda	MICRO AquaticSite Method: Get Lambda
init_riskList	MICRO FeedingSite Method: Initialize a Risk List
Landscape.Aqua.Parameters	MICRO: Generate Parameters for Landscape AquaticSite
Landscape.Feeding.Parameters	MICRO: Generate Parameters for Landscape FeedingSite
Landscape.Parameters	MICRO: Generate Parameters for Landscape Object
Landscape	MICRO Landscape Class Definition
makeLambda_Micro	MICRO: Generate Seasonal Emergence (Lambda) for Emerge model of Aquatic Ecology
MICRO.Aqua.Setup	Initialize Aquatic Ecology COMPONENT
MICRO.Emerge.Setup	Initialize Emerge MODULE
MICRO.Tile.Parameters	MICRO: Generate Parameters for MicroTile Object
MicroSite	MICRO Generic Site Class Definition
MicroTile	MICRO Tile Class Definition
oneDay_MicroEmerge	MICRO Landscape Method: Emerge One Day Dynamics
oneDay_MicroEmergeSite	MICRO AquaticSite Method: Emerge One Day Dynamics
set_MicroEggQ	MICRO AquaticSite Method: Set the EggQ
set_MicroHuman_ActivitySpace	MICRO: Set Human ActivitySpace
set_MicroHuman_FemalePopPointer	MICRO: Set Human MicroMosquitoPopFemale Pointer
set_MicroHuman_LandscapePointer	MICRO: Set Human Landscape Pointer
set_MicroHuman_TilePointer	MICRO: Set Human MicroTile Pointer
set_MicroHumanPop_FemalePopPointer	MICRO: Set HumanPop MicroMosquitoPopFemale Pointer
set_MicroHumanPop_LandscapePointer	MICRO: Set HumanPop Landscape Pointer
set_MicroHumanPop_TilePointer	MICRO: Set HumanPop MicroTile Pointer
set_MicroImagoQ	MICRO AquaticSite Method: Set the ImagoQ
set_MicroLambda	MICRO AquaticSite Method: Set Lambda
zero_MicroEggQ	MICRO AquaticSite Method: Zero out a slot in the EggQ
zero_MicroImagoQ	MICRO AquaticSite Method: Zero out a slot in the ImagoQ
track_MicroEggQ	MICRO AquaticSite Method: Track the EggQ
track_MicroImagoQ	MICRO AquaticSite Method: Track the ImagoQ
MACRO Macrosimulation TILE classes, methods, fields, and functions
addCohort_MacroEmerge	MACRO: Calculate Emerging Adults for MacroPatch
emergingAdults_MacroEmerge	MACRO: Calculate Emerging Adults from ImagoQ for MacroPatch
extend_PatchesImagoQ	Extend MacroPatch ImagoQ (Emerging Adults Queue)
get_PatchesEggQ	Get MacroPatch EggQ (Egg Batches)
get_PatchesImagoQ	Get MacroPatch ImagoQ (Emerging Adults Queue)
get_season	Get MacroPatch Seasonal Emergence
getEIP_MacroMosquitoPop	Set MacroMosquitoPop getEIP
layEggs_MacroMosquitoPop	MacroMosquitoPop layEggs
MACRO.MosquitoPop.Parameters	Initialize MosquitoPop Parameters for MacroMosquitoPop
MACRO.Patch.Emerge.Setup	Initialize Additional Methods & Fields in MacroPatch for Emerge Module of Aquatic Ecology
MACRO.Patch.Parameters	Initialize MACRO Patch Parameters for MacroPatch
MACRO.Tile.Parameters	Initialize MACRO Tile Parameters for MacroTile
MacroMosquitoPop	MACRO Mosquito Population Class Definition
MacroPatch	MACRO Patch Class Definition
MacroTile	MACRO Tile Class Definition
makeLambda_Macro	MACRO: Generate Seasonal Emergence (Lambda) for Emerge model of Aquatic Ecology
manage_PatchesImagoQ	Manage MacroPatch ImagoQ (Emerging Adults Queue)
oneDay_MacroEmerge	Get MacroPatch Seasonal Emergence
oneDay_RM	MACRO MacroMosquitoPop Method: oneDay_RM
set_PatchesEggQ	Set MacroPatch EggQ (Egg Batches)
set_PatchesImagoQ	Set MacroPatch ImagoQ (Emerging Adults Queue)
set_PatchPf	Pf: Set MacroPatch Patch Pf Population
set_season	Set MacroPatch Seasonal Emergence
simMacro	MACRO MacroTile Simulate MACRO Dynamics
HUMAN The HUMAN component
get_MicroHuman_ActivitySpace	MICRO: Get Human ActivitySpace
get_MicroHuman_FemalePopPointer	MICRO: Get Human MicroMosquitoPopFemale Pointer
get_MicroHuman_LandscapePointer	MICRO: Get Human Landscape Pointer
get_MicroHuman_TilePointer	MICRO: Get Human MicroTile Pointer
get_MicroHumanPop_FemalePopPointer	MICRO: Get HumanPop MicroMosquitoPopFemale Pointer
get_MicroHumanPop_LandscapePointer	MICRO: Get HumanPop Landscape Pointer
get_MicroHumanPop_TilePointer	MICRO: Get HumanPop MicroTile Pointer
Human	Human Class Definition
HumanPop.Parameters	MICRO: Initialize HumanPop Parameters for HumanPop
HumanPop	HumanPop Class Definition
init_MicroHuman_ActivitySpace	MICRO Human Method: Initialize Activity Space
init_MicroHumanPop_ActivitySpace	MICRO HumanPop Method: Initialize Activity Space
MICRO.Humans.Setup	MICRO: Initialize Additional Methods & Fields in Human and HumanPop
sim_MicroHuman_ActivitySpace	MICRO Human Method: Initialize Activity Space
sim_MicroHumanPop_ActivitySpace	MICRO HumanPop Method: Simulate Activity Space
siteAges	Generate Ages for HumanPop
sitePops	Generate Site Sizes for HumanPop
MACRO HUMAN Methods Bititng and Travel related methods for MACRO
MACRO.Humans.Setup	MACRO: Initialize Additional Methods & Fields in Human
MacroHuman_add2Q_Bites	MACRO Human Method: add2Q_Bites
MacroHuman_add2Q_returnHome	add2Q_returnHome
MacroHuman_add2Q_takeTrip	add2Q_takeTrip
MacroHuman_event_returnHome	event_returnHome
MacroHuman_event_takeTrip	event_takeTrip
MacroHuman_expectedBites	MACRO Human Method: expectedBites
MacroHuman_get_location	MACRO: Get Human location
MacroHuman_get_MosquitoPointer	Get Human MacroMosquitoPop Pointer
MacroHuman_get_myEIR	Get Human myEIR
MacroHuman_get_PatchesPointer	Get Human MacroPatch Pointer
MacroHuman_get_patchID	Get Human patchID
MacroHuman_get_TilePointer	Get Human MacroTile Pointer
MacroHuman_get_travel	Get Human travel
MacroHuman_get_travelHistoryHuman	Return Human Travel History
MacroHuman_get_travelHistoryHumanPop	Return HumanPop Travel History
MacroHuman_go_Patch	Set Human go_Patch
MacroHuman_init_travel	MACRO Human Method: Initialize Travel
MacroHuman_json_travelHistory	Write HumanPop Travel History to JSON
MacroHuman_queueInfectiousBites	MACRO HumanPop Method: queueInfectiousBites
MacroHuman_returnHome	returnHome
MacroHuman_set_location	MACRO: Set Human location
MacroHuman_set_MosquitoPointer	Set Human MacroMosquitoPop Pointer
MacroHuman_set_myEIR	Set Human myEIR
MacroHuman_set_PatchesPointer	Set Human MacroPatch Pointer
MacroHuman_set_patchID	Set Human patchID
MacroHuman_set_TilePointer	Set Human MacroTile Pointer
MacroHuman_set_travel	Set Human travel
MacroHuman_sumKappa	MACRO: Update Human kappa For a Patch
MacroHuman_takeTrip	takeTrip
MacroHuman_track_travel	Track Human Travel History
MacroHuman_updateKappa	MACRO: Update HumanPop kappa For all Patches
MacroHumanPop_get_patchID	MACRO HumanPop Method: Get all patchID
MacroHumanPop_set_patchID	MACRO HumanPop Method: Set all patchID
PATHOGEN The PATHOGEN component
get_PatchPf	Pf: Get MacroPatch Patch Pf Population
humanPfSI	PfSI Human-stage Pathogen Class Definition
MACRO.PatchPf.Setup	MACRO: Initialize Additional PATHOGEN PatchPf Methods & Fields in MacroPatch
MacroPatchPf	MACRO Pf Pathogen Object Class Definition
mosquitoPfSI	PfSI Mosquito-stage Pathogen Class Definition
PfSI.Parameters	Initialize PfSI Module Parameters
PfSI.Setup	Initialize PfSI MODULE
plot_PfSI	plot_PfSI
plot_PfSIOneTrajectory	plot_PfSI_oneTrajectory
queueBitesNegBinom_SimBitePfSI	PfSI SimBite HumanPop Method: Generate Negative Binomial Biting Distribution
SimBitePfSI.Setup	Initialize SimBite PfSI Module
PATHOGEN PfSI PfSI (Enhanced SIS Model for Plasmodium falciparum Transmission)
add2Q_endPfSI	PfSI Human Event: Add PfSI Clearance Event to Event Queue
add2Q_endprophylaxisPfSI	PfSI Human Event: Add PfSI End of Chemoprophylaxis Event to Event Queue
add2Q_feverPfSI	PfSI Human Event: Add PfSI Fever Event to Event Queue
add2Q_gsvaccinatePfSI	PfSI Human Event: Add PfSI GS Vaccination Event to Event Queue
add2Q_gswanePfSI	PfSI Human Event: Add PfSI GS Waning Protection Event to Event Queue
add2Q_infectHumanPfSI	PfSI Human Event: Add PfSI Infection Event to Event Queue
add2Q_pevaccinatePfSI	PfSI Human Event: Add PfSI PE Vaccination Event to Event Queue
add2Q_pewanePfSI	PfSI Human Event: Add PfSI PE Waning Protection Event to Event Queue
add2Q_treatPfSI	PfSI Human Event: Add PfSI Treatment Event to Event Queue
endPfSI	PfSI Human Event: PfSI Clearance Event
endprophylaxisPfSI	PfSI Human Event: PfSI End of Chemoprophylaxis Event
event_endPfSI	PfSI Human Event: Generate PfSI Clearance Event
event_endprophylaxisPfSI	PfSI Human Event: Generate PfSI End of Chemoprophylaxis Event
event_feverPfSI	PfSI Human Event: Generate PfSI Fever Event
event_gsvaccinatePfSI	PfSI Human Event: Generate PfSI GS Vaccination Event
event_gswanePfSI	PfSI Human Event: Generate PfSI GS Waning Protection Event
event_infectHumanPfSI	PfSI Human Event: Generate PfSI Infection Event
event_pevaccinatePfSI	PfSI Human Event: Generate PfSI PE Vaccination Event
event_pewanePfSI	PfSI Human Event: Generate PfSI PE Waning Protection Event
event_treatPfSI	PfSI Human Event: Generate PfSI Treatment Event
feverPfSI	PfSI Human Event: PfSI Fever Event
gsvaccinatePfSI	PfSI Human Event: PfSI GS Vaccination Event
gswanePfSI	PfSI Human Event: PfSI GS Waning Protection Event
Human_get_humanPfSI	PfSI Human Method: Get Human-stage PfSI Object
Human_get_PfSI_PAR	PfSI Human Method: Get PfSI_PAR
Human_set_humanPfSI	PfSI Human Method: Set Human-stage PfSI Object
Human_set_PfSI_PAR	PfSI Human Method: Set PfSI_PAR
humanPfSI	PfSI Human-stage Pathogen Class Definition
HumanPop_set_humanPfSI	PfSI HumanPop Method: Set Human-stage PfSI Object
HumanPop_set_PfSI_PAR	PfSI HumanPop Method: Set PfSI Paramters for a HumanPop
infectHumanPfSI	PfSI Human Event: PfSI Infection Event
infectiousBite_PfSI	PfSI Human Method: Infectious Bite on Human
init_MACRO_PfSI	PfSI HumanPop Method: Initialize MACRO PfSI Infections
init_MacroTile_PfSI	MACRO PfSI MacroTile Method: Initialize MACRO PfSI Infections
init_MICRO_PfSI	PfSI HumanPop Method: Initialize MICRO PfSI Infections
lmTest_PfSI	PfSI Human Method: PfSI Light Microscopy Test
mosquitoPfSI	PfSI Mosquito-stage Pathogen Class Definition
pevaccinatePfSI	PfSI Human Event: PfSI PE Vaccination Event
pewanePfSI	PfSI Human Event: PfSI PE Waning Protection Event
PfSI_increment_PfID	PfSI HumanPop Method: Increment PfID
PfSI_ttClearPf	PfSI Human Method: Duration of Infection
PfSI_ttFeverPf	PfSI Human Method: Timing of Fever Incident
PfSI_ttGSWanePf	PfSI Human Method: Duration of protection by GS Vaccination
PfSI_ttInfectionPf	PfSI Human Method: Duration of Latency
PfSI_ttPEWanePf	PfSI Human Method: Duration of protection by PE Vaccination
PfSI_ttSusceptiblePf	PfSI Human Method: Duration of Protection from Chemoprophylaxis
PfSI_ttTreatPf	PfSI Human Method: Timing of Treatment
PfSI.Parameters	Initialize PfSI Module Parameters
PfSI.Setup	Initialize PfSI MODULE
plot_PfSI	plot_PfSI
plot_PfSIOneTrajectory	plot_PfSI_oneTrajectory
probeHost_PfSI	PfSI Human Method: Host Probing
queueBitesNegBinom_SimBitePfSI	PfSI SimBite HumanPop Method: Generate Negative Binomial Biting Distribution
rdtTest_PfSI	PfSI Human Method: PfSI Rapid Diagnostic Test
SimBitePfSI.Setup	Initialize SimBite PfSI Module
treatPfSI	PfSI Human Event: PfSI Treatment Event
util_PfSIHistory	PfSI: Calculate State Space Occupancy Vector
util_PfSIoneHistory	PfSI: Write One Human History
util_PfSISlice	PfSI: Empty Occupancy Vector
PATHOGEN PfMOI PfMOI (Multiplicity of Infection Compartmental Model for Plasmodium falciparum Transmission)
add2Q_endPfMOI	PfMOI Human Event: Add PfMOI Clearance Event to Event Queue
add2Q_endprophylaxisPfMOI	PfMOI Human Event: Add PfMOI End of Chemoprophylaxis Event to Event Queue
add2Q_feverPfMOI	PfMOI Human Event: Add PfMOI Fever Event to Event Queue
add2Q_gsvaccinatePfMOI	PfMOI Human Event: Add PfMOI GS Vaccination Event to Event Queue
add2Q_gswanePfMOI	PfMOI Human Event: Add PfMOI GS Waning Protection Event to Event Queue
add2Q_infectHumanPfMOI	PfMOI Human Event: Add PfMOI Infection Event to Event Queue
add2Q_pevaccinatePfMOI	PfMOI Human Event: Add PfMOI PE Vaccination Event to Event Queue
add2Q_pewanePfMOI	PfMOI Human Event: Add PfMOI PE Waning Protection Event to Event Queue
add2Q_SimBitePfMOI	PfMOI SimBite Human Event: Add PfMOI Simulated Bite Event to Event Queue
add2Q_treatPfMOI	PfMOI Human Event: Add PfMOI Treatment Event to Event Queue
endPfMOI	PfMOI Human Event: PfMOI Infection Event
endprophylaxisPfMOI	PfMOI Human Event: PfMOI End of Chemoprophylaxis Event
event_endPfMOI	PfMOI Human Event: Generate PfMOI Clearance Event
event_endprophylaxisPfMOI	PfMOI Human Event: Generate PfMOI End of Chemoprophylaxis Event
event_feverPfMOI	PfMOI Human Event: Generate PfMOI Fever Event
event_gsvaccinatePfMOI	PfMOI Human Event: Generate PfMOI GS Vaccination Event
event_gswanePfMOI	PfMOI Human Event: Generate PfMOI GS Waning Protection Event
event_infectHumanPfMOI	PfMOI Human Event: Generate PfMOI Infection Event
event_pevaccinatePfMOI	PfMOI Human Event: Generate PfMOI PE Vaccination Event
event_pewanePfMOI	PfMOI Human Event: Generate PfMOI PE Waning Protection Event
event_SimBitePfMOI	PfMOI SimBite Human Event: Generate PfMOI Simulated Bite Event
event_treatPfMOI	PfMOI Human Event: Generate PfMOI Treatment Event
feverPfMOI	PfMOI Human Event: PfMOI Infection Event
gsvaccinatePfMOI	PfMOI Human Event: PfMOI GS Vaccination Event
gswanePfMOI	PfMOI Human Event: PfMOI GS Waning Protection Event
Human_get_humanPfMOI	PfMOI Human Method: Get Human-stage PfMOI Object
Human_get_PfMOI_PAR	PfMOI Human Method: Get PfMOI_PAR
Human_set_humanPfMOI	PfMOI Human Method: Set Human-stage PfMOI Object
Human_set_PfMOI_PAR	PfMOI Human Method: Set PfMOI_PAR
humanPfMOI	PfMOI Human-stage Pathogen Class Definition
HumanPop_get_PfMOI_history	PfMOI HumanPop Method: Get PfMOI Histories
HumanPop_set_humanPfMOI	PfMOI HumanPop Method: Set Human-stage PfMOI Object
HumanPop_set_PfMOI_PAR	PfMOI HumanPop Method: Set PfMOI Paramters for a HumanPop
infectHumanPfMOI	PfMOI Human Event: PfMOI Infection Event
infectiousBite_PfMOI	PfMOI Human Method: Infectious Bite on Human
init_MICRO_PfMOI	PfMOI HumanPop Method: Initialize MICRO PfMOI Infections
lmTest_PfMOI	PfMOI Human Method: Light Microscopy Test
mosquitoPfMOI	PfMOI Mosquito-stage Pathogen Class Definition
pevaccinatePfMOI	PfMOI Human Event: PfMOI PE Vaccination Event
pewanePfMOI	PfMOI Human Event: PfMOI PE Waning Protection Event
PfMOI_increment_PfID	PfMOI HumanPop Method: Increment PfID
PfMOI_ttClearPf	PfMOI Human Method: Duration of Infection
PfMOI_ttFeverPf	PfMOI Human Method: Timing of Fever Incident
PfMOI_ttGSWanePf	PfMOI Human Method: Duration of protection by GS Vaccination
PfMOI_ttInfectionPf	PfMOI Human Method: Duration of Latency
PfMOI_ttPEWanePf	PfMOI Human Method: Duration of protection by PE Vaccination
PfMOI_ttSusceptiblePf	PfMOI Human Method: Duration of Protection from Chemoprophylaxis
PfMOI_ttTreatPf	PfMOI Human Method: Timing of Treatment
PfMOI.Parameters	Initialize PfMOI Module Parameters
PfMOI.Setup	Initialize PfMOI MODULE
probeHost_PfMOI	PfMOI Human Method: Host Probing
queueBites_SimBitePfMOI	PfMOI SimBite HumanPop Method: Queue SimBites for Population
queueVaccination_SimBitePfMOI	PfMOI SimBite HumanPop Method: Queue Vaccination for Population
rdtTest_PfMOI	PfMOI Human Method: Rapid Diagnostic Test
SimBitePfMOI	PfMOI SimBite Human Event: PfMOI Simulated Bite Event
SimBitePfMOI.Setup	Initialize SimBite PfMOI Module
treatPfMOI	PfMOI Human Event: PfMOI Treatment Event
PATHOGEN SimBite Simulate infected bites on humans without explicitly modeling mosquitos. Contains methods to construct biting as stochastic processes and to construct parametric biting distributins on individuals.
add2Q_SimBitePfMOI	PfMOI SimBite Human Event: Add PfMOI Simulated Bite Event to Event Queue
event_SimBitePfMOI	PfMOI SimBite Human Event: Generate PfMOI Simulated Bite Event
queueBites_SimBitePfMOI	PfMOI SimBite HumanPop Method: Queue SimBites for Population
queueBitesNegBinom_SimBitePfSI	PfSI SimBite HumanPop Method: Generate Negative Binomial Biting Distribution
queueVaccination_SimBitePfMOI	PfMOI SimBite HumanPop Method: Queue Vaccination for Population
SimBite_MeanBites	Simulate Biting Process from Population Mean Number of Bites
SimBite_WaitingTime	Simulate Biting Process from Population Mean Waiting Time Between Bites
SimBitePfMOI	PfMOI SimBite Human Event: PfMOI Simulated Bite Event
SimBitePfMOI.Setup	Initialize SimBite PfMOI Module
SimBitePfSI.Setup	Initialize SimBite PfSI Module
M-BITES Mosquito Bout-based and Individual-based Transmission Ecology Simulation
init.mbitesEnergetics	Initialize Energetics Methods for M-BITES
MBITES.Parameters	Generate Parameters for MASH-MBPT MICRO/M-BITES
MicroMosquito	MICRO Generic Mosquito Class Definition
MicroMosquitoFemale	MICRO Female Mosquito Class Definition
MicroMosquitoMale	MICRO Male Mosquito Class Definition
MicroMosquitoPop	MICRO Generic Mosquito Population Class Definition
MosquitoFemaleHistory	MicroMosquitoFemale History Object
MosquitoMaleHistory	MicroMosquitoMale History Object
M-BITES Generic Methods M-BITES methods shared across lifecycle modules.
MbitesGeneric_FemaleBout	MBITES: Generic Female Bout for MicroMosquitoFemale
MbitesGeneric_isActive	MBITES: Generic Active Check for MicroMosquito
MbitesGeneric_isAlive	MBITES: Generic Alive Check for MicroMosquito
MbitesGeneric.Setup	Initialize Generic Methods for M-BITES
M-BITES BRO Methods M-BITES Blood Feeding, Resting, Oviposition lifecycle module.
MbitesBRO_getWTS	MBITES-BRO: Return Landing Spot Weights for MicroMosquitoFemale
MbitesBRO_timingExponential	MBITES-BRO: Exponential Timing for MicroMosquitoFemale
MbitesBRO.Setup	MBITES-BRO: Initialize Additional Methods & Fields in MicroMosquitoPop and MicroMosquito
MICRO Search Kernels Kernel (probability density) based mosquito movement.
get_MicroKernel_movement_BRO	MICRO Search Kernels: MicroMosquitoPopFemale Access MvAll Object for M-BITES BRO Lifecycle Model
get_MicroKernel_movement_BROM	MICRO Search Kernels: MicroMosquitoPopFemale Access MvAll Object for M-BITES BROM Lifecycle Model
get_MicroKernel_movement_FULL	MICRO Search Kernels: MicroMosquitoPopFemale Access MvAll Object for Full M-BITES Lifecycle Model
get_MicroKernel_movement_Male	MICRO Search Kernels: MicroMosquitoPopMale Access MvAll Object for M-BITES BROM Lifecycle Model
MicroKernel_DistanceMat	MICRO Search Kernels: Calculate Euclidean Distance Matrix
MicroKernel_exactAll	MICRO Search Kernels: Exact Movement Object Between All Point Sets
MicroKernel_exactMvOb	MICRO Search Kernels: Exact Movement Object Between Two Point Sets
MicroKernel_KernelsPlot	MICRO Search Kernels: Plot Kernel Functions
MicroKernel_moveMe_BRO	MICRO Search Kernels: MicroMosquitoFemale Movement Function for Full M-BITES Lifecycle Model
MicroKernel_moveMe_BROM	MICRO Search Kernels: MicroMosquitoFemale Movement Function for Full M-BITES Lifecycle Model
MicroKernel_moveMe_FULL	MICRO Search Kernels: MicroMosquitoFemale Movement Function for Full M-BITES Lifecycle Model
MicroKernel_moveMe_Male	MICRO Search Kernels: MicroMosquitoMale Movement Function for Full M-BITES Lifecycle Model
MicroKernel_PowerKernel	MICRO Search Kernels: Calculate Power Kernel
MicroKernel_prSort	MICRO Search Kernels: Sort ID and Probabilities
MicroKernel_SampleMvOb	MICRO Search Kernels: MicroMosquito Sample MvOb
SEARCH.MicroKernel.Setup	MICRO Search Kernels: Initialize Additional Methods & Fields in MicroMosquitoPop and MicroMosquito
Auxiliary Miscellaneous MASH classes, methods, fields, and functions
allocEggQ	Allocate EggQ
allocImagoQ	Allocate ImagoQ
newEgg	Empty Egg Batch Slot for EggQ
newImago	Generate a ImagoQ Slot
betaRootA	Find shape1 (alpha) Parameter of Beta Distribution for Given Mean
betaRootB	Find shape2 (beta) Parameter of Beta Distribution for Given Mean
gammaRates	Gamma Distributed Biting Rates
pointsClustered	Generate Matern Clustering Point Pattern for Landscape Sites
pointsLattice	Generate Regular Grid (Lattice) Point Pattern for Landscape Sites
pointsOverdispersed	Generate Overdispersed (SSI) Point Pattern for Landscape Sites
pointsPoisson	Generate Poisson Point Pattern for Landscape Sites
SimBite_MeanBites	Simulate Biting Process from Population Mean Number of Bites
SimBite_WaitingTime	Simulate Biting Process from Population Mean Waiting Time Between Bites
util_List2Df	Utility: Convert List to Data Frame
util_PfSIHistory	PfSI: Calculate State Space Occupancy Vector
util_PfSISlice	PfSI: Empty Occupancy Vector