This is mostly used to modify PfMOI parameters for different human populations after creation by using set_PfMOI_PAR method of HumanPop
PfMOI.Parameters(MosyMaxI = 1L, Pf_c = 0.15, Pf_b = 0.55, DurationPf = 200, LatentPf = 10, FeverPf = 0.3, mnFeverPf = 10, vrFeverPf = 0.1, TreatPf = 0.5, mnTreatPf = 3, mnChemoprophylaxisPf = 32, PEProtectPf = 0.99, peBlockPf = 1, mnPEPf = 270, vrPEPf = 50, GSProtectPf = 1, gsBlockPf = 0.9, mnGSPf = 180, vrGSPf = 20, rdtSensPf = 0.9, rdtSpecPf = 0.1, lmSensPf = 0.9, lmSpecPf = 0.1)
| MosyMaxI | maximum number of clonal variants passed in single mosquito to human transmission event (set to |
|---|---|
| Pf_c | infected human to mosquito transmission efficiency |
| Pf_b | infected mosquito to human transmission efficiency |
| DurationPf | duration of infection (assuming clonal variants are cleared independently) |
| LatentPf | latency (How many days after the infectious bite does the infection start?) |
| FeverPf | probability of fever |
| mnFeverPf | mean of timing of fever incident relative to start of PfMOI infection (log-normally distributed, mean on natural scale) |
| vrFeverPf | standard deviation of timing of fever incident relative to start of PfMOI infection (log-normally distributed, standard deviation on natural scale) |
| TreatPf | probability of treatment after fever incident |
| mnTreatPf | average waiting time from fever to treatment (exponentially distributed) |
| mnChemoprophylaxisPf | constant period of proteection from chemoprophylaxis |
| PEProtectPf | proportion protected by PE vaccination (probability vaccination successful) |
| peBlockPf | proportion of infections blocked by PE vaccination |
| mnPEPf | mean duration of protection from PE vaccination |
| vrPEPf | standard deviation of protection from PE vaccination |
| GSProtectPf | proportion protected by GS vaccination (probability vaccination successful) |
| gsBlockPf | proportion of infections blocked by GS vaccination |
| mnGSPf | mean duration of protection from GS vaccination |
| vrGSPf | standard deviation of protection from GS vaccination |
| rdtSensPf | RDT sensitivity |
| rdtSpecPf | RDT specificity |
| lmSensPf | Light Microscopy sensitivity |
| lmSpecPf | Light Microscopy specificity |
return a list
PfMOI.Parameters()#> $MosyMaxI #> [1] 1 #> #> $Pf_c #> [1] 0.15 #> #> $Pf_b #> [1] 0.55 #> #> $DurationPf #> [1] 200 #> #> $LatentPf #> [1] 10 #> #> $FeverPf #> [1] 0.3 #> #> $mnFeverPf #> [1] 10 #> #> $vrFeverPf #> [1] 0.1 #> #> $TreatPf #> [1] 0.5 #> #> $mnTreatPf #> [1] 3 #> #> $mnChemoprophylaxisPf #> [1] 32 #> #> $PEProtectPf #> [1] 0.99 #> #> $peBlockPf #> [1] 1 #> #> $mnPEPf #> [1] 270 #> #> $vrPEPf #> [1] 50 #> #> $GSProtectPf #> [1] 1 #> #> $gsBlockPf #> [1] 0.9 #> #> $mnGSPf #> [1] 180 #> #> $vrGSPf #> [1] 20 #> #> $rdtSensPf #> [1] 0.9 #> #> $rdtSpecPf #> [1] 0.1 #> #> $lmSensPf #> [1] 0.9 #> #> $lmSpecPf #> [1] 0.1 #>