This is mostly used to modify PfSI parameters for different human populations after creation by using set_PfSI_PAR method of HumanPop
PfSI.Parameters(Pf_c = 0.15, Pf_b = 0.55, DurationPf = 200, LatentPf = 10, FeverPf = 0.3, mnFeverPf = 10, vrFeverPf = 0.1, TreatPf = 0.5, mnTreatPf = 1, mnChemoprophylaxisPf = 32, PEProtectPf = 0.99, peBlockPf = 1, mnPEPf = 270, vrPEPf = 50, GSProtectPf = 1, gsBlockPf = 0.9, mnGSPf = 180, vrGSPf = 20, rdtSensPf = 0.9, rdtSpecPf = 0.1, lmSensPf = 0.9, lmSpecPf = 0.1)
| Pf_c | 0.15; infected human to mosquito transmission efficiency |
|---|---|
| Pf_b | 0.55; infected mosquito to human transmission efficiency |
| DurationPf | 200; duration of infection (How many days does the infection last?) |
| LatentPf | 10; latency (How many days after the infectious bite does the infection start?) |
| FeverPf | 0.3; probability of fever |
| mnFeverPf | 10; mean of Gaussian-distributed timing of fever incident (relative to start of the infection) |
| vrFeverPf | 0.1; standard deviation of Gaussian-distributed timing of fever incident (relative to start of the infection) |
| TreatPf | 0.5; probability of treatment |
| mnTreatPf | 1; timing of treatment (relative to start of the fever) |
| mnChemoprophylaxisPf | 32; Prophylaxis, time to susceptibility (duration of protection due to chemoprophylaxis) |
| PEProtectPf | 0.99; proportion protected by PE vaccination (probability vaccination successful) |
| peBlockPf | 1; proportion of infections blocked by PE vaccination |
| mnPEPf | 270; mean duration of protection from PE vaccination |
| vrPEPf | 50; standard deviation of protection from PE vaccination |
| GSProtectPf | 1; proportion protected by GS vaccination (probability vaccination successful) |
| gsBlockPf | 0.9; proportion of infections blocked by GS vaccination |
| mnGSPf | 180; mean duration of protection from GS vaccination |
| vrGSPf | 20; standard deviation of protection from GS vaccination |
| rdtSensPf | 0.9; RDT sensitivity |
| rdtSpecPf | 0.1; RDT specificity |
| lmSensPf | 0.9; Light Microscopy sensitivity |
| lmSpecPf | 0.1; Light Microscopy specificity |
return a list
PFSI.SETUP()#> Error in PFSI.SETUP(): could not find function "PFSI.SETUP"