PfMOI Human-stage Pathogen Class Definition

This is the human-stage PfMOI module pathogen object defined in Human.

humanPfMOI

Format

An R6Class generator object

Methods

• Constructor

  • new: initialize a new Landscape object

    • Arguments:

      • Landscape_PAR: see Landscape.Parameters for parameter generation function.

• Getters & Setters

  • get_XX: get private$XX

    • Arguments:

      • ixS: if NULL return all sites, otherwise return site indexed by ixS

  • set_FeedingSites: set private$FeedingSites

    • Arguments:

      • FeedingSites: replacement object (see below)

      • ixS: if NULL replace all sites, otherwise replace site indexed by ixS

• Pointers

  • get_TilePointer: get MicroTile pointer

  • set_TilePointer: set MicroTile pointer

Fields

• History

  • tEvent: time of the event (jump time for embedded CTMC)

  • events: the new state (state after the jump)

  • MOI: current multiplicity of infection