Generate named list of parameters used throughout MICRO/M-BITES. All arguments have default values which are listed below before the definition.
MBITES.Parameters(enterhouse.a = 9, enterhouse.b = 1, feedHaz.a = 99, feedHaz.b = 1, aquaHaz.a = 99, aquaHaz.b = 1, sugarHaz.a = 99, sugarHaz.b = 1, swarmHaz.a = 99, swarmHaz.b = 1, F.t = 1, B.t = 0.75, R.t = 1.5, L.t = 0.75, O.t = 1, M.t = 1.5, S.t = 0.5, F.s = 0.99, B.s = 0.99, L.s = 0.99, O.s = 0.99, M.s = 0.95, S.s = 0.95, F.p = 0.95, B.p = 0.98, R.p = 0.98, L.p = 0.8, O.p = 0.98, M.p = 0.98, S.p = 0.98, maleM.s = 0.99, maleM.p = 0.95, Q = 0.9, reFeed = 0.01, bm.a = 7.5, bm.b = 2.5, rf.a = 60, rf.b = 5000, of.a = 5, of.b = 5000, S.a = 20, S.b = 10, S.u = 1/7, S.sa = 15, S.sb = 5, sf.a = 7.5, sf.b = 4.5, B.energy = 1/10, energyPreG = 0, preGsugar = 0, preGblood = 0, eggP.min = 0.5, sns.a = 0.085, sns.b = 100, ttsz.p = 0.5, ttsz.a = 5, ttsz.b = 95, ttr.a = 15, ttr.b = 500, maxBatch = 30, E.p = 0.5, Emax = 90, Eb = 0.9, eEndm = 180, eEndV = 30, surviveH = 1, probeH = 1, surviveprobeH = 1, feedH = 1, surviveL = 1, feedL = 1, SUGAR = TRUE, ESTIVATION = FALSE, MATE = TRUE, SENESCE = TRUE, TATTER = TRUE, REFEED = TRUE, OVERFEED = TRUE, HISTORY = TRUE, batchSize = "bms", eggMatT = "off", InAndOut = matrix(c(c(4, 2, 1, 0, 1), c(2, 1, 1, 0, 1), c(2, 1, 1, 0, 2), c(1, 1, 1, 0, 1), c(6, 4, 2, 1, 0)), byrow = FALSE, ncol = 5), Fwts = rep(1, 5), Rwts = rep(1, 5), Lwts = rep(1, 5), Owts = rep(1, 5), Mwts = rep(1, 5), Swts = rep(1, 5))
| enterhouse.a | = 9, # beta house entry parameters |
|---|---|
| enterhouse.b | = 1, # beta house entry parameters |
| feedHaz.a | = 99, # beta feeding site hazard weights |
| feedHaz.b | = 1, # beta feeding site hazard weights |
| aquaHaz.a | = 99, # beta aqua site hazard weights |
| aquaHaz.b | = 1, # beta aqua site hazard weights |
| sugarHaz.a | = 99, # beta sugar site hazard weights |
| sugarHaz.b | = 1, # beta sugar site hazard weights |
| swarmHaz.a | = 99, # beta swarm site hazard weights |
| swarmHaz.b | = 1, # beta swarm site hazard weights |
| F.t | = 1, #blood feed search bout timing |
| B.t | = 0.75, #blood feed attempt bout timing |
| R.t | = 1.5, #resting bout timing |
| L.t | = 0.75, #egg laying search bout timing |
| O.t | = 1, #egg laying attempt bout timing |
| M.t | = 1.5, #mating bout timing |
| S.t | = 0.5, #sugar feeding bout timing |
| F.s | = 0.99, |
| B.s | = 0.99, |
| L.s | = 0.99, |
| O.s | = 0.99, |
| M.s | = 0.95, |
| S.s | = 0.95, |
| F.p | = 0.95, |
| B.p | = 0.98, |
| R.p | = 0.98, |
| L.p | = 0.80, |
| O.p | = 0.98, |
| M.p | = 0.98, |
| S.p | = 0.98, |
| maleM.s | = .99, |
| maleM.p | = .95, |
| Q | = 0.9, #human blood index |
| reFeed | = 0.01, #probability to refeed post resting bout |
| bm.a | = 7.5, #shape param for bloodmeal size |
| bm.b | = 2.5, #shape param for bloodmeal size |
| rf.a | = 60, #exp param for refeeding as function of bmSize |
| rf.b | = 5e3, #exp param for refeeding as function of bmSize |
| of.a | = 5, #exp param for overfeeding as function of bmSize |
| of.b | = 5e3, #exp param for overfeeding as function of bmSize |
| S.a | = 20, #exp param for death as function of energy |
| S.b | = 10, #exp param for death as function of energy |
| S.u | = 1/7, #energy expenditure for each bout |
| S.sa | = 15, #exp param for sugar bout as function of energy |
| S.sb | = 5, #exp param for sugar bout as function of energy |
| sf.a | = 7.5, #shape param for sugar feed size |
| sf.b | = 4.5, #shape param for sugar feed size |
| B.energy | = 1/10, #scaling factor energy from a bloodmeal |
| energyPreG | = 0, #pre-gonotrophic energy requirement |
| preGsugar | = 0, |
| preGblood | = 0, |
| sns.a | = 0.085, #exp param for senescence |
| sns.b | = 100, #exp param for senescence |
| ttsz.p | = 0.5, #zero-inflation for tattering damage |
| ttsz.a | = 5, #shape param for tattering damage |
| ttsz.b | = 95, #shape param for tattering damage |
| ttr.a | = 15, #exp param for tattering survival |
| ttr.b | = 500, #exp param for tattering survival |
| maxBatch | = 30, #maximum batch size |
| E.p | = 0.5, # probability of surviving estivation |
| Emax | = 90, # onset of the dry season; a day of the calendar year |
| Eb | = 0.9, |
| eEndm | = 180, # end of estivation; a day of the calendar year |
| eEndV | = 30, |
| surviveH | = 1, |
| probeH | = 1, |
| surviveprobeH | = 1, |
| feedH | = 1, |
| surviveL | = 1, |
| feedL | = 1, |
| SUGAR | = TRUE, |
| ESTIVATION | = FALSE, |
| MATE | = TRUE, |
| SENESCE | = TRUE, #senesce |
| TATTER | = TRUE, #tattering |
| REFEED | = TRUE, |
| OVERFEED | TRUE; simulate overfeeding? See |
| HISTORY | TRUE; record history? Needed for |
| batchSize | "bms"; switches for how egg batch size is calculated, should be either "bms" or "norm", see |
| eggMatT | "off"; switches for how egg maturation is calculated, should be either "off" or "norm", see |
| InAndOut | matrix of weights for landing spot, see |
| Fwts | rep(1,5); blood feeding search bout landing spot weights, see |
| Rwts | rep(1,5); resting bout landing spot weights, see |
| Lwts | rep(1,5); egg laying search bout landing spot weights, see |
| Owts | rep(1,5); egg laying attempt bout landing spot weights, see |
| Mwts | rep(1,5); mating bout landing spot weights, see |
| Swts | rep(1,5); sugar bout landing spot weights, see |
a named list of parameters
P = MBITES.PAR()#> Error in MBITES.PAR(): could not find function "MBITES.PAR"